El Capitan System Integrity Protocol - SSQT not compatible?

Re all the posts about SSQT not working on El Capitan 10.11.1 I'm wondering if this is a clash with the SIP? Was SoulseekQt-2015-8-21 supposed to deal with this? Haven't found any comments to this effect.

There's certainly a fix where you can shut down the System Integrity Protocol (http://osxdaily.com/2015/10/05/disable-rootless-system-integrity-protect...) however I don't fancy doing that - you have to make sure you've got a recovery disc etc., etc. - all good things but in the end you're then technically vulnerable to more Malware. Regardless of what we think Apple's real motives are here, most software providers are updating with protocols that the SIP will accept (i think!) Eg. Private Internet Access (VPN) has just updated and all is now fine. I know we've just had a recent SSQT re-build (and I am very grateful!) but unfortunately, it looks like we need a new SSQT MacOSX update. Maybe?